Volume 92 Issue 46 | p. 8 | News of The Week
Issue Date: November 17, 2014 | Web Date: November 14, 2014

Hydrogen Bond Images From AFM Questioned

Microscopy: “Bonds” may be artifact of tip flexibility
Department: Science & Technology
News Channels: Nano SCENE, Materials SCENE
Keywords: atomic force microscopy, AFM, hydrogen bond
[+]Enlarge
The AFM image of a tetramer of bis(para-pyridyl)acetylene (ball and stick structure shown) molecules shows what appears to be electron density (arrow) between the pyridyl nitrogens.
Credit: Phys. Rev. Lett.
Atomic force microscope image showing little barbells with faint lines between the ends of some of them to the ends of others.
 
The AFM image of a tetramer of bis(para-pyridyl)acetylene (ball and stick structure shown) molecules shows what appears to be electron density (arrow) between the pyridyl nitrogens.
Credit: Phys. Rev. Lett.
[+]Enlarge
Credit: Phys. Rev. Lett.
Structures of tetramer of bis(p-pyridyl)acetylene molecules.
 
Credit: Phys. Rev. Lett.

Purported hydrogen bond interactions appearing in atomic force microscopy (AFM) images may be an experimental artifact.

AFM images published last year by a team led by Xiaohui Qiu and Zhihai Cheng of China’s National Center for Nanoscience & Technology and Wei Ji of Renmin University of China appeared to show electron density where hydrogen bonds would connect 8-hydroxyquinoline molecules (C&EN, Sept. 30, 2013, page 5).

But what the group imaged may have been caused by the interaction of the AFM tip with the potential energy surface between the molecules, according to work by a separate team led by Sampsa Hämäläinen and Peter Liljeroth of Finland’s Aalto University School of Science and Ingmar Swart of the Netherlands’ Utrecht University.

The researchers used AFM to study tetramers of bis(para-pyridyl)acetylene (BPPA) molecules. The tetramers are held together by intermolecular C–H∙∙∙N hydrogen bonds and bring two nitrogen atoms on separate molecules within 3 Å of each other. The nitrogens should have no bonding interaction, yet AFM images appear to show a bond between the atoms (Phys. Rev. Lett. 2014, DOI: 10.1103/physrevlett.113.186102).

In all of these experiments, a CO molecule is attached to the AFM tip. The CO can bend to reduce its interaction with the molecules on the surface. The bending causes ridges in the potential energy surface between atoms of different molecules to show up as sharp lines in AFM images.

“We’re not saying there can be no contribution from hydrogen bonds, but we show that you can also have contrast when there is no bond at all,” Swart says. Swart and colleagues’ results bolster theoretical work led by Pavel Jelinek of the Czech Academy of Science (Phys. Rev. B 2014, DOI: 10.1103/physrevb.90.085421).

Ji and colleagues, however, suggest that there is some charge density between the BPPA nitrogens imaged by AFM. They also did not observe linelike features between nearby N and O atoms in their hydroxyquinoline study.

The results emphasize that researchers must be cautious about interpreting highly processed microscopy images, says James K. Gimzewski of UCLA and California NanoSystems Institute. “The nano is invisible, and images of it should be treated with care,” he says.

 
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