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Synthesis

Nanovessel Host Leads To Retention Of Configuration In SN2 Reaction

Organic Chemistry: Unexpected reaction may arise from unprecedented supramolecular chemistry

by Bethany Halford
October 15, 2014

INSIDE THE HOST
Credit: UC Berkeley
See what it's like to be the guest molecule inside the UC-Berkeley group's host complex.

A change to the canon of organic chemistry appears to be in order. Chemists at the University of California, Berkeley, report an SN2 reaction that proceeds with retention of stereochemical configuration (J. Am. Chem. Soc. 2014, DOI: 10.1021/ja508799p).

As students of organic chemistry learn early on, SN2 reactions are characterized by inversion of stereochemical configuration. The incoming nucleophile displaces the leaving group on a carbon atom through a so-called backside attack that flips the arrangement of the carbon’s three other substituents. It’s akin to an umbrella becoming inverted by a strong gust of wind.

Chen Zhao, F. Dean Toste, Kenneth N. Raymond, and Robert G. Bergman discovered they could make the reaction proceed with stereochemical retention quite by accident. They’d come across a clever way of making single diastereomers of these so-called nanovessels and hoped to use them in asymmetric reactions. But when they tried to use the nanovessel for a substitution reaction on a racemic mixture of a benzylic substrate with the hope of getting primarily one enantiomer of product, their results were disappointing.

Nanovessel Catalyst (C,H = white, O = red, N = blue)
[+]Enlarge
Credit: J. Am. Chem. Soc.
A catalytic nanovessel (C and H in white, O in red, N in blue).
Credit: J. Am. Chem. Soc.

So, they looked at what happened when they did the same reaction on a single enantiomer of the benzylic substrate. Much to their surprise, the reaction proceeded with up to 90% retention of stereochemical configuration.

“We think that what we’re seeing is a kind of double inversion,” Bergman explains. As the leaving group departs, the π-electrons from one of the naphthalene groups that make up the nanovessel’s walls interact with the backside of the developing carbocation in the benzylic substrate. This sort of interaction has been observed before with neighboring groups within a substrate molecule but never intermolecularly.

“This paper is a great combination of good, old-fashioned sleuthing applied to the frontiers area of supramolecular host-guest catalysis,” comments Ryan A. Shenvi, an organic chemist at Scripps Research Institute, in La Jolla, Calif., who has also tinkered with the canon of SN2 reactions. “The ability to divert the bulk-solvent reactivity of a substrate, the possibility of aromatic ring participation, and the reaction’s sheer coolness all give the project great momentum. It’s easy to imagine many more discoveries snowballing from this single observation,” he says.

This SN2 reaction proceeds with stereochemical retention inside a nanovessel host
Reaction scheme showing an S<sub>N</sub>2 reaction that uses a nanovessel catalyst and proceeds with retention of stereochemistry.
More Online: Take a look inside the cavity of the catalytic nanovessel at http://cenm.ag/nanovessel.

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