Enzyme Makes A Tough Cut | June 15, 2009 Issue - Vol. 87 Issue 24 | Chemical & Engineering News
Volume 87 Issue 24 | p. 8 | News of The Week
Issue Date: June 15, 2009

Enzyme Makes A Tough Cut

Crystal structure of bacterial enzyme suggests route to a challenging bond cleavage
Department: Science & Technology
Keywords: X-ray crystal structure, Enzyme, Hydroxyethylphosphonate dioxygenase (HEPD), Catalysis
This bacterial enzyme uses iron to break a challenging C–C bond.
Credit: Satish K. Nair
This bacterial enzyme uses iron to break a challenging C–C bond.
Credit: Satish K. Nair

With the help of X-ray crystallography, researchers have identified and structurally analyzed an iron-containing enzyme that carries out a tricky bond-breaking reaction. The findings could inspire versatile new catalysts.

Bacteria make phosphinothricin, a natural product widely used as a weed killer, with several unusual steps. One includes the cleavage of a very poorly activated carbon-carbon bond in 2-hydroxyethylphosphonate (HEP), a phosphinothricin precursor.

Because unactivated C–C bonds are tough to break with the known synthetic tool kit, scientists want to understand how this transformation takes place, says chemist Wilfred A. van der Donk of the University of Illinois, Urbana-Champaign, who has been working to understand phosphinothricin biosynthesis. But until now his team "didn't know what kind of enzyme did the job and whether cofactors were required for it to work," he says.

So van der Donk's group joined forces with structural biologist Satish K. Nair and microbiologist William W. Metcalf, both at Illinois. The team has now solved the enzyme's X-ray structure and identified it as a nonheme iron-containing oxygenase (Nature, DOI: 10.1038/nature07972). The enzyme, hydroxyethylphosphonate dioxygenase (HEPD), uses molecular oxygen to cleave the poorly activated C–C bond in HEP.

The team found that HEPD doesn't need cofactors to do its job, unlike most other dioxygenase enzymes. Instead, they speculate that HEPD begins its catalytic cycle with iron in the +2 oxidation state and that the enzyme reacts with oxygen to form an Fe(III) superoxide species, which initiates the bond cleavage by plucking a hydrogen atom from HEP.

That superoxide species has been described in other iron enzymes, including one that cleaves C–C bonds, say J. Martin Bollinger Jr. and Carsten Krebs, who run a lab studying metalloenzymes at Pennsylvania State University. The Illinois team hasn't observed the Fe(III) superoxide directly, but a combination of techniques including Mössbauer spectroscopy might confirm its role in the bond-cleaving mechanism, they say. "By learning about these enzymes, we hope new chemical or catalytic processes will emerge," they add.

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