Volume 94 Issue 18 | p. 7 | News of The Week
Issue Date: May 2, 2016 | Web Date: April 27, 2016

How the first nucleotides might have formed on Earth

Model compounds spontaneously form nucleotides under prebiotic conditions
Department: Science & Technology
News Channels: Biological SCENE, Organic SCENE
Keywords: origins of life, nucleic acids, nucleotides, RNA
Building blocks
Melamine and barbituric acid nucleotides form base pairs, creating hexads that self-assemble into a supramolecular stack.
Credit: Nat. Commun.
Chemical structures of prebiotic nucleotides and schematic of self-assembled supramolecular structure.
Building blocks
Melamine and barbituric acid nucleotides form base pairs, creating hexads that self-assemble into a supramolecular stack.
Credit: Nat. Commun.

An ongoing challenge for researchers who are studying the origins of life is figuring out how biopolymers such as DNA and RNA might have formed in the first place. In the case of RNA, a candidate for the first genetic material, researchers have observed the formation of its constituent bases and sugars under model early Earth conditions. But demonstrating how those bases and sugars might have combined to form nucleotides under prebiotic conditions has been challenging.

Now, a team led by Nicholas V. Hud of Georgia Institute of Technology has identified nitrogen-containing heterocycles that spontaneously react with the sugar ribose-5-phosphate in water to form nucleotides (Nat. Commun. 2016, DOI: 10.1038/ncomms11328).

These nucleotides are capable of forming hydrogen-bonded base pairs similar to the Watson-Crick base pairs formed by modern nucleic acids. Furthermore, the newly created building blocks can self-assemble into large, stacked, noncovalent complexes, which could eventually facilitate the formation of RNA-like molecules.

Hud’s team made the nucleotides with the heterocycles barbituric acid and melamine, both of which have been observed in model prebiotic reactions in the past. Both of them reacted spontaneously with ribose with yields greater than 50%. The bases in modern nucleic acids don’t combine with ribose under the same conditions.

“We think we can consider these bases to be very plausibly prebiotic,” Hud says. “They’re doing things that look like they could get us on the road to making an RNA-like molecule.” Such a molecule could have later evolved to incorporate the bases now found in RNA, he contends.

Besides forming base pairs with each other, Hud says, the melamine and barbituric acid would also likely hydrogen bond with modern nucleobases—melamine with uracil and barbituric acid with adenine. Such “forward compatibility” would ensure that as the bases evolved, they would retain the ability to transfer genetic information.

In addition, Hud and coworkers found that the ribose in their plausible prebiotic nucleotides preferentially adopts the β-anomeric form, which refers to the conformation of the carbon in the sugar that attaches to the base. When the nucleotides stack into noncovalent complexes, the assemblies end up with twice as much of the β-anomer as the α-anomer.

The researchers don’t know exactly what’s causing the enrichment, but it happens both in the initial reaction between the heterocycle and the ribose and in the formation of the noncovalent complex. “This is very encouraging for us because the β form is the one life uses,” Hud says.

The work “demonstrates how a biologically relevant structure can spontaneously self-assemble in aqueous solution,” says David W. Deamer, an origins-of-life researcher at the University of California, Santa Cruz. “A similar process was likely to have occurred in the prebiotic environment as an important step toward the linear polymers that were necessary for life to begin.”

Figuring out how to make such linear polymers is the next step for Hud’s team. “We don’t have the liberty of using enzymes,” Hud says. “We need to get this to go with something plausibly prebiotic. It’s still a challenge, but we’re getting close.”

This article has been translated into Spanish by Divulgame.org and can be found here.

Chemical & Engineering News
ISSN 0009-2347
Copyright © American Chemical Society
Constantinos M. Paleos (Tue May 03 05:01:14 EDT 2016)
A recent work, C.M. Paleos, A decisive step toward the origin of life, Trends in Biochemical Sciences 2015, vol 40, 487, also describes non-enzymatic polymerization of mononucleotides in a phospholipid liquid crystalline matrix, suggesting that the hypothesized Lipid World might have preceded the RNA World

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